Metadynamics simulations of CK2 compound unbinding to understand slow dissociation kinetics.
Date, M.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Casein kinase II subunit alpha | 342 | Homo sapiens | Mutation(s): 0  Gene Names: CSNK2A1, CK2A1 EC: 2.7.11.1 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P68400 (Homo sapiens) Explore P68400  Go to UniProtKB:  P68400 | |||||
PHAROS:  P68400 GTEx:  ENSG00000101266  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P68400 | ||||
Sequence AnnotationsExpand | |||||
|
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
S8W (Subject of Investigation/LOI) Query on S8W | NA [auth B], U [auth A] | ~{N}-[2-[(1~{R},2~{R})-2-(aminomethyl)cyclopropyl]-5-[[3-cyano-7-(cyclopropylamino)pyrazolo[1,5-a]pyrimidin-5-yl]amino]phenyl]ethanamide C22 H24 N8 O CAQMRKQVHMXQJL-SCLBCKFNSA-N | |||
SO4 Query on SO4 | C [auth A] D [auth A] E [auth A] F [auth A] G [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
EDO Query on EDO | AA [auth B] BA [auth B] CA [auth B] DA [auth B] EA [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 127.14 | α = 90 |
b = 127.14 | β = 90 |
c = 124.75 | γ = 90 |
Software Name | Purpose |
---|---|
BUSTER | refinement |
PDB_EXTRACT | data extraction |
XDS | data reduction |
SCALA | data scaling |
AMoRE | phasing |